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Originally Posted by Stephen
Simply the Doctor is a genius and knew straight after running the scan on Amy that something wasn't right  |
Which would be why they made a point of showing the pregnancy scan being inconclusive in several episodes..
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As he knew about the Flesh he wanted to go check it out. That's why he planned on dropping Amy and Rory off so he could go investigate.
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Indeed.. The team (under Steven Moffat) seem to be very good at introducing little, apparently insignificant, details into stories that only become significant when you've seen later episodes.